PhyloGeoSim 1.0 beta

Simulate the evolution of DNA sequences under a model of coalescence on a 2-dimensional grid in which each cell is treated as one population. Going backward in time, populations can exchange gene copies and/or host coalescence events between two or more gene copies, at each generation.

Topic

Evolutionary biology;Genetics;DNA

Detail

  • Operation: Modelling and simulation

  • Software interface: Command-line user interface

  • Language: Java

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Publications

  • Inferring the past and present connectivity across the range of a North American leaf beetle: combining ecological niche modeling and a geographically explicit model of coalescence.
  • Dellicour S, et al. Inferring the past and present connectivity across the range of a North American leaf beetle: combining ecological niche modeling and a geographically explicit model of coalescence. Inferring the past and present connectivity across the range of a North American leaf beetle: combining ecological niche modeling and a geographically explicit model of coalescence. 2014; 68:2371-85. doi: 10.1111/evo.12426
  • https://doi.org/10.1111/evo.12426
  • PMID: 24749775
  • PMC: -

Download and documentation

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